Transcript: ENST00000480594.1 SLC1A4-002

Description

solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 [Source:HGNC Symbol;Acc:10942]

Gene Synonyms

ASCT1, SATT

Location

About this transcript

This transcript has 7 exons, is associated with 10163 variant alleles and maps to 683 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000234256.3	SLC1A4-001	4561	532aa	ENSP00000234256.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1879	P43007	NM_003038.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531327.1	SLC1A4-005	1217	234aa	ENSP00000431942.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54362	P43007	NM_001193493.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493121.1	SLC1A4-003	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471551.1	SLC1A4-004	461	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000480594.1	SLC1A4-002	5789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 5,789 bps,

Version

ENST00000480594.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000327463 (version 1)