Transcript: ENST00000492106.1 IFT57-003

Description

intraflagellar transport 57 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:17367]

Gene Synonyms

DERP8, ESRRBL1, FLJ10147, HIPPI, MHS4R2

Location

About this transcript

This transcript has 2 exons, is annotated with 3 domains and features, is associated with 1343 variant alleles and maps to 165 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264538.3	IFT57-001	3203	429aa	ENSP00000264538.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2951	Q9NWB7	NM_018010.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492106.1	IFT57-003	526	157aa	ENSP00000417439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JB84	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000478157.1	IFT57-002	931	81aa	ENSP00000417768.1	Nonsense mediated decay		F8WBM2	-	-
ENST00000468021.1	IFT57-005	382	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465024.1	IFT57-004	755	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485979.1	IFT57-006	396	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 526 bps, Translation length: 157 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000492106.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000353920 (version 1)