Transcript: ENST00000392100.2 SMOC2-004

Description

SPARC related modular calcium binding 2 [Source:HGNC Symbol;Acc:20323]

Gene Synonyms

DTDP1, MST117, MSTP117, MSTP140, SMAP2, bA270C4A.1, bA37D8.1, dJ421D16.1

Location

Chromosome 6: 169,053,725-169,067,183 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 7034 variant alleles and maps to 110 oligo probes.

Gene

This transcript is a product of gene ENSG00000112562.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000354536.5	SMOC2-002	3150	457aa	ENSP00000346537.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5307	B4DNB1 Q9H3U7	NM_022138.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356284.2	SMOC2-001	3117	446aa	ENSP00000348630.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55076	B4DNB1 Q9H3U7	NM_001166412.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417208.1	SMOC2-005	672	84aa	ENSP00000398696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y5I1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000392100.2	SMOC2-004	400	67aa	ENSP00000375949.2	Nonsense mediated decay		H0Y3J4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477998.1	SMOC2-003	362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 400 bps, Translation length: 67 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000392100.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000043204 (version 4)

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Transcript: ENST00000392100.2 SMOC2-004

Summary