Description
SMG9 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:25763]
Gene Synonyms
C19orf61, F17127_1, FLJ12886
Location
Chromosome 19: 44,235,542-44,237,262 reverse strand.
About this transcript
This transcript has 2 exons, is associated with 799 variant alleles and maps to 172 oligo probes.
Gene
This transcript is a product of gene ENSG00000105771.9 Show transcript tableHide transcript table
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000270066.6 | SMG9-001 | 2353 | 520aa | ENSP00000270066.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33043 | M0QX70 M0QYR7 M0QZC7 M0QZH1 M0R2N0 Q9H0W8 | NM_019108.2 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000601170.1 | SMG9-002 | 2387 | 495aa | ENSP00000471398.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M0QX70 M0QYR7 M0QZC7 M0QZH1 M0R2N0 Q9H0W8 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000597586.1 | SMG9-008 | 697 | 156aa | ENSP00000472684.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M0QX70 M0QYR7 M0QZH1 M0R2N0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000602222.1 | SMG9-005 | 650 | 183aa | ENSP00000470451.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M0QX70 M0QYR7 M0QZC7 M0QZH1 M0R2N0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000596714.1 | SMG9-007 | 576 | 115aa | ENSP00000470541.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M0QZH1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000601925.1 | SMG9-006 | 550 | 148aa | ENSP00000470031.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M0QX70 M0QYR7 M0QZH1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000599804.1 | SMG9-009 | 438 | 120aa | ENSP00000468941.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | M0QX70 M0QZH1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000597598.1 | SMG9-004 | 1077 | 157aa | ENSP00000471442.1 | Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000595700.1 | SMG9-003 | 1401 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000598886.1 | SMG9-010 | 681 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000598860.1 | SMG9-011 | 574 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000594081.1 | SMG9-012 | 563 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000600097.1 | SMG9-013 | 538 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |