Transcript: ENST00000585541.1 CAPS-005

Description

calcyphosine [Source:HGNC Symbol;Acc:1487]

Gene Synonyms

CAPS1, MGC126562

Location

Chromosome 19: 5,914,283-5,915,141 forward strand.

About this transcript

This transcript has 2 exons, is associated with 670 variant alleles and maps to 441 oligo probes.

Gene

This transcript is a product of gene ENSG00000105519.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000222125.5	CAPS-001	1221	189aa	ENSP00000222125.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12156	K7ES72 Q13938 Q96ET4	NM_004058.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588776.1	CAPS-003	3515	275aa	ENSP00000465883.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL21 K7ES72 Q8NF12 Q96ET4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452990.2	CAPS-002	1134	162aa	ENSP00000403263.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45934	K7ES72	NM_080590.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588865.1	CAPS-004	489	118aa	ENSP00000468582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES72	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585541.1	CAPS-005	784	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590428.1	CAPS-006	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 784 bps,

Version

ENST00000585541.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000452258 (version 1)

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Transcript: ENST00000585541.1 CAPS-005

Summary