Transcript: ENST00000585541.1 CAPS-005

Description

calcyphosine [Source:HGNC Symbol;Acc:1487]

Gene Synonyms

CAPS1, MGC126562

Location

Chromosome 19: 5,914,283-5,915,141 forward strand.

About this transcript

This transcript has 2 exons, is associated with 670 variant alleles and maps to 441 oligo probes.

Gene

This transcript is a product of gene ENSG00000105519.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000588776.1	CAPS-003	3515	275aa	ENSP00000465883.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL21 K7ES72 Q8NF12 Q96ET4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000222125.5	CAPS-001	1221	189aa	ENSP00000222125.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12156	K7ES72 Q13938 Q96ET4	NM_004058.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452990.2	CAPS-002	1134	162aa	ENSP00000403263.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45934	K7ES72	NM_080590.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588865.1	CAPS-004	489	118aa	ENSP00000468582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ES72	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585541.1	CAPS-005	784	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590428.1	CAPS-006	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 784 bps,

Version

ENST00000585541.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000452258 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000585541.1 CAPS-005

Summary