Transcript: ENST00000558614.1 MTFMT-004

Description

mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:29666]

Gene Synonyms

COXPD15, FMT, FMT1

Location

Chromosome 15: 65,308,593-65,321,912 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 5804 variant alleles and maps to 171 oligo probes.

Gene

This transcript is a product of gene ENSG00000103707.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000220058.4	MTFMT-001	1739	389aa	ENSP00000220058.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45280	H3BTN9 Q96DP5	NM_139242.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558460.1	MTFMT-003	1522	389aa	ENSP00000452646.1	Nonsense mediated decay	CCDS45280	H3BTN9 Q96DP5	-	-
ENST00000543678.1	MTFMT-002	1216	144aa	ENSP00000443754.1	Nonsense mediated decay		B7Z734 H3BTN9	-	-
ENST00000560717.1	MTFMT-005	1111	134aa	ENSP00000457257.1	Nonsense mediated decay		H3BTN9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561025.1	MTFMT-006	204	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558614.1	MTFMT-004	852	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559633.1	MTFMT-007	421	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 852 bps,

Version

ENST00000558614.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418159 (version 1)

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Transcript: ENST00000558614.1 MTFMT-004

Summary