Transcript: ENST00000570206.1 SALL1-003

Description

spalt-like transcription factor 1 [Source:HGNC Symbol;Acc:10524]

Gene Synonyms

HSAL1, Hsal1, SAL1, Sal-1, TBS, ZNF794

Location

Chromosome 16: 51,171,243-51,184,508 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 55 domains and features, is associated with 7202 variant alleles and maps to 362 oligo probes.

Gene

This transcript is a product of gene ENSG00000103449.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000251020.4	SALL1-001	5146	1324aa	ENSP00000251020.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10747	H3BSM9 Q9NSC2	NM_002968.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440970.1	SALL1-201	5253	1227aa	ENSP00000407914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45483	H3BSM9 Q9NSC2	NM_001127892.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570206.1	SALL1-003	3896	1154aa	ENSP00000456777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BSM9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566102.1	SALL1-002	565	34aa	ENSP00000455582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BQ32	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541611.1	SALL1-202	565	147aa	ENSP00000442827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H733	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562674.1	SALL1-005	407	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 3,896 bps, Translation length: 1,154 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000570206.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000422686 (version 1)

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Transcript: ENST00000570206.1 SALL1-003

Summary