Transcript: ENST00000553835.1 PSMC1-004

Description

proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547]

Gene Synonyms

P26S4, S4, p56

Location

Chromosome 14: 90,722,871-90,734,618 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 5048 variant alleles and maps to 172 oligo probes.

Gene

This transcript is a product of gene ENSG00000100764.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261303.8	PSMC1-001	1641	440aa	ENSP00000261303.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32139	B4DR63 G3V4X1 P62191 Q53XL8	NM_002802.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543772.2	PSMC1-002	1389	367aa	ENSP00000445147.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DR63 G3V4X1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553835.1	PSMC1-004	390	84aa	ENSP00000452049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V4X1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000555787.1	PSMC1-003	2246	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555679.1	PSMC1-006	606	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000557357.1	PSMC1-007	581	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554624.1	PSMC1-005	577	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 390 bps, Translation length: 84 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000553835.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411254 (version 1)

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Transcript: ENST00000553835.1 PSMC1-004

Summary