Transcript: ENST00000554888.1 RIN3-011

Description

Ras and Rab interactor 3 [Source:HGNC Symbol;Acc:18751]

Gene Synonyms

FLJ22439

Location

Chromosome 14: 93,081,818-93,111,535 forward strand.

About this transcript

This transcript has 3 exons, is associated with 12204 variant alleles and maps to 49 oligo probes.

Gene

This transcript is a product of gene ENSG00000100599.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216487.7	RIN3-001	3859	985aa	ENSP00000216487.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32144	Q5CZ74 Q8TB24	NM_024832.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556418.1	RIN3-007	4079	420aa	ENSP00000450986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557762.1	RIN3-008	517	78aa	ENSP00000452155.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V534	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555589.1	RIN3-003	2814	159aa	ENSP00000450682.1	Nonsense mediated decay		G3V2I7	-	-
ENST00000418924.2	RIN3-005	3592	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000554888.1	RIN3-011	865	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553959.1	RIN3-014	687	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553992.1	RIN3-012	577	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555908.1	RIN3-013	390	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000556385.1	RIN3-009	856	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555891.1	RIN3-010	317	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 865 bps,

Version

ENST00000554888.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000412278 (version 1)

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Transcript: ENST00000554888.1 RIN3-011

Summary