Transcript: ENST00000541014.1 C12orf4-005

Description

chromosome 12 open reading frame 4 [Source:HGNC Symbol;Acc:1184]

Location

Chromosome 12: 4,626,258-4,647,670 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 4 domains and features, is associated with 8635 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSG00000047621.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261250.3	C12orf4-001	3826	552aa	ENSP00000261250.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8528	F5GXX6 F5H744 Q9NQ89	NM_020374.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545746.1	C12orf4-002	2168	552aa	ENSP00000439996.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8528	F5GXX6 F5H744 Q9NQ89	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541014.1	C12orf4-005	1049	204aa	ENSP00000440820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXX6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000542080.1	C12orf4-004	561	144aa	ENSP00000442806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H744	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000544258.1	C12orf4-008	727	47aa	ENSP00000444594.1	Nonsense mediated decay		H0YGS6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000544697.1	C12orf4-006	685	77aa	ENSP00000439471.1	Nonsense mediated decay		F5H271	-	-
ENST00000509318.2	C12orf4-009	574	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000535887.1	C12orf4-007	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535030.1	C12orf4-003	561	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 5, Transcript length: 1,049 bps, Translation length: 204 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000541014.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000399294 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000541014.1 C12orf4-005

Summary