Transcript: ENST00000046794.5 LCP2-001

Description

lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa) [Source:HGNC Symbol;Acc:6529]

Gene Synonyms

SLP-76, SLP76

Location

Chromosome 5: 169,673,241-169,725,231 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 14 domains and features, is associated with 23667 variant alleles and maps to 825 oligo probes.

Gene

This transcript is a product of gene ENSG00000043462.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000046794.5	LCP2-001	4678	533aa	ENSP00000046794.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47339	Q13094	NM_005565.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521416.1	LCP2-005	1599	328aa	ENSP00000428871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ESF6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520344.1	LCP2-011	666	140aa	ENSP00000430391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RKA2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520322.1	LCP2-006	2211	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522760.1	LCP2-009	962	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519594.1	LCP2-010	858	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522823.1	LCP2-007	628	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519149.1	LCP2-008	614	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523369.1	LCP2-012	512	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 21, Transcript length: 4,678 bps, Translation length: 533 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13094

CCDS

This transcript is a member of the Human CCDS set: CCDS47339

Version

ENST00000046794.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000371727 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000046794.5 LCP2-001

Summary