Gene: SCN9A ENSG00000169432

Description

sodium channel, voltage-gated, type IX, alpha subunit [Source:HGNC Symbol;Acc:10597]

Gene Synonyms

ETHA, FEB3B, GEFSP7, NE-NA, NENA, Nav1.7, PN1, SFNP

Location

Chromosome 2: 167,051,695-167,232,503 reverse strand.

GRCh37:CM000664.1

About this gene

This gene has 7 transcripts (splice variants), 16 paralogues and is associated with 11 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375387.4	SCN9A-202	9787	1989aa	ENSP00000364536.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PF08 H7C064	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000303354.6	SCN9A-201	9787	1989aa	ENSP00000304748.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PBA5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409672.1	SCN9A-001	9768	1977aa	ENSP00000386306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46441	Q15858 Q53QP0	NM_002977.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409435.1	SCN9A-004	5967	1988aa	ENSP00000386330.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15858	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452182.1	SCN9A-003	1618	539aa	ENSP00000393141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C064	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000454569.1	SCN9A-002	1585	528aa	ENSP00000413212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15858	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000472119.1	SCN9A-006	905	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: SCN9A ENSG00000169432

Summary