Transcript: ENST00000409672.1 SCN9A-001

Description

sodium channel, voltage-gated, type IX, alpha subunit [Source:HGNC Symbol;Acc:10597]

Gene Synonyms

ETHA, FEB3B, GEFSP7, NE-NA, NENA, Nav1.7, PN1, SFNP

Location

Chromosome 2: 167,051,695-167,232,503 reverse strand.

About this transcript

This transcript has 27 exons, is annotated with 63 domains and features, is associated with 79985 variant alleles and maps to 933 oligo probes.

Gene

This transcript is a product of gene ENSG00000169432.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375387.4	SCN9A-202	9787	1989aa	ENSP00000364536.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PF08 H7C064	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000303354.6	SCN9A-201	9787	1989aa	ENSP00000304748.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PBA5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409672.1	SCN9A-001	9768	1977aa	ENSP00000386306.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46441	Q15858 Q53QP0	NM_002977.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409435.1	SCN9A-004	5967	1988aa	ENSP00000386330.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15858	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452182.1	SCN9A-003	1618	539aa	ENSP00000393141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C064	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000454569.1	SCN9A-002	1585	528aa	ENSP00000413212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q15858	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000472119.1	SCN9A-006	905	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 9,768 bps, Translation length: 1,977 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15858

CCDS

This transcript is a member of the Human CCDS set: CCDS46441

Version

ENST00000409672.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000333636 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000409672.1 SCN9A-001

Summary