Description
regulatory factor X, 5 (influences HLA class II expression) [Source:HGNC Symbol;Acc:9986]
Location
Chromosome 1: 151,313,116-151,319,833 reverse strand.
GRCh37:CM000663.1
About this gene
This gene has 22 transcripts (splice variants), 1 paralogue and is associated with 2 phenotypes.
Transcripts
Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
---|---|---|---|---|---|---|---|---|---|
ENST00000290524.4 | RFX5-001 | 3576 | 616aa | ENSP00000290524.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS994 | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 P48382 Q9UG77 | NM_001025603.1 | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000368870.2 | RFX5-020 | 2459 | 616aa | ENSP00000357864.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS994 | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 P48382 Q9UG77 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000452671.2 | RFX5-002 | 2355 | 616aa | ENSP00000389130.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS994 | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 P48382 Q9UG77 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
ENST00000452513.2 | RFX5-201 | 2100 | 576aa | ENSP00000398388.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | B7Z848 F2Z2G0 Q9UG77 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
ENST00000392746.3 | RFX5-008 | 2056 | 596aa | ENSP00000376502.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 F8W689 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000450506.1 | RFX5-003 | 903 | 184aa | ENSP00000398666.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6UE82 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000422595.1 | RFX5-004 | 902 | 229aa | ENSP00000399095.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6U6P3 F6UE82 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000436637.1 | RFX5-010 | 765 | 235aa | ENSP00000390769.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | H0Y4B4 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
ENST00000437327.1 | RFX5-011 | 597 | 105aa | ENSP00000413153.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 F6X8N2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000430227.1 | RFX5-012 | 585 | 123aa | ENSP00000387618.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 F6TYI9 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000412774.1 | RFX5-005 | 562 | 117aa | ENSP00000396810.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 F6TYI9 F6X8N2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000436271.1 | RFX5-021 | 545 | 96aa | ENSP00000390720.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6S3S0 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000458484.1 | RFX5-009 | 537 | 165aa | ENSP00000409187.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F2Z2G0 F6R6G4 F6S3S0 F6TYI9 F6X8N2 F6X9D6 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
ENST00000444392.1 | RFX5-014 | 596 | 50aa | ENSP00000412900.1 | Nonsense mediated decay | F2Z2G0 | - | - | |
ENST00000435314.1 | RFX5-018 | 583 | 42aa | ENSP00000415012.1 | Nonsense mediated decay | F8WDU3 | - | - | |
ENST00000452456.1 | RFX5-013 | 567 | 50aa | ENSP00000405067.1 | Nonsense mediated decay | F2Z2G0 | - | - | |
ENST00000421986.1 | RFX5-017 | 558 | 44aa | ENSP00000399372.1 | Nonsense mediated decay | F8WFE4 | - | - | |
ENST00000478564.1 | RFX5-019 | 555 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
ENST00000494217.1 | RFX5-016 | 588 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000479681.1 | RFX5-015 | 583 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000475144.1 | RFX5-007 | 519 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
ENST00000469513.1 | RFX5-006 | 396 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |