Human (GRCh37.p13)
Description

regulatory factor X, 5 (influences HLA class II expression) [Source:HGNC Symbol;Acc:9986]

About this transcript

This transcript has 10 exons, is annotated with 12 domains and features, is associated with 2718 variant alleles and maps to 424 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeqFlags
ENST00000290524.4RFX5-0013576616aaENSP00000290524.4
 
Protein coding
CCDS994F2Z2G0 F6R6G4 F6S3S0
F6TYI9 F6U6P3 F6UE82
F6X8N2 F6X9D6 F8W689
P48382 Q9UG77
NM_001025603.1GENCODE basic
ENST00000368870.2RFX5-0202459616aaENSP00000357864.2
 
Protein coding
CCDS994F2Z2G0 F6R6G4 F6S3S0
F6TYI9 F6U6P3 F6UE82
F6X8N2 F6X9D6 F8W689
P48382 Q9UG77
-GENCODE basic
ENST00000452671.2RFX5-0022355616aaENSP00000389130.2
 
Protein coding
CCDS994F2Z2G0 F6R6G4 F6S3S0
F6TYI9 F6U6P3 F6UE82
F6X8N2 F6X9D6 F8W689
P48382 Q9UG77
-GENCODE basic
ENST00000452513.2RFX5-2012100576aaENSP00000398388.2
 
Protein coding
B7Z848 F2Z2G0 Q9UG77
-GENCODE basic
ENST00000392746.3RFX5-0082056596aaENSP00000376502.3
 
Protein coding
F2Z2G0 F6R6G4 F6S3S0
F6TYI9 F6U6P3 F6UE82
F6X8N2 F6X9D6 F8W689
-CDS 3' incomplete
ENST00000450506.1RFX5-003903184aaENSP00000398666.1
 
Protein coding
F2Z2G0 F6R6G4 F6S3S0
F6TYI9 F6UE82 F6X8N2
F6X9D6
-CDS 3' incomplete
ENST00000422595.1RFX5-004902229aaENSP00000399095.1
 
Protein coding
F2Z2G0 F6R6G4 F6S3S0
F6TYI9 F6U6P3 F6UE82
F6X8N2 F6X9D6
-CDS 3' incomplete
ENST00000436637.1RFX5-010765235aaENSP00000390769.1
 
Protein coding
H0Y4B4 -CDS 5' incomplete
ENST00000437327.1RFX5-011597105aaENSP00000413153.1
 
Protein coding
F2Z2G0 F6S3S0 F6X8N2
-CDS 3' incomplete
ENST00000430227.1RFX5-012585123aaENSP00000387618.1
 
Protein coding
F2Z2G0 F6S3S0 F6TYI9
F6X8N2 F6X9D6
-CDS 3' incomplete
ENST00000412774.1RFX5-005562117aaENSP00000396810.1
 
Protein coding
F2Z2G0 F6S3S0 F6TYI9
F6X8N2
-CDS 3' incomplete
ENST00000436271.1RFX5-02154596aaENSP00000390720.1
 
Protein coding
F2Z2G0 F6S3S0 -CDS 3' incomplete
ENST00000458484.1RFX5-009537165aaENSP00000409187.1
 
Protein coding
F2Z2G0 F6R6G4 F6S3S0
F6TYI9 F6X8N2 F6X9D6
-CDS 3' incomplete
ENST00000444392.1RFX5-01459650aaENSP00000412900.1
 
Nonsense mediated decay
F2Z2G0 --
ENST00000435314.1RFX5-01858342aaENSP00000415012.1
 
Nonsense mediated decay
F8WDU3 --
ENST00000452456.1RFX5-01356750aaENSP00000405067.1
 
Nonsense mediated decay
F2Z2G0 --
ENST00000421986.1RFX5-01755844aaENSP00000399372.1
 
Nonsense mediated decay
F8WFE4 --
ENST00000478564.1RFX5-019555No protein-
 
Processed transcript
---
ENST00000494217.1RFX5-016588No protein-
 
Retained intron
---
ENST00000479681.1RFX5-015583No protein-
 
Retained intron
---
ENST00000475144.1RFX5-007519No protein-
 
Retained intron
---
ENST00000469513.1RFX5-006396No protein-
 
Retained intron
---
Statistics

Exons: 10, Coding exons: 8, Transcript length: 2,100 bps, Translation length: 576 residues

Version

ENST00000452513.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Stop codons

This transcript has a variant, rs2233856, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-HCB.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.