Loading…

Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: TM9SF1 ENSG00000100926

.

Description

transmembrane 9 superfamily member 1 [Source:HGNC Symbol;Acc:11864]

Gene Synonyms

HMP70, MP70

Location

Chromosome 14: 24,658,349-24,682,679 reverse strand.

GRCh37:CM000676.1

About this gene

This gene has 13 transcripts (splice variants) and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261789.4	TM9SF1-002	2452	606aa	ENSP00000261789.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9617	E9PJC4 E9PL78 E9PNW2 E9PQY7 E9PS99 G3V1B9 O15321	NM_006405.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000556387.1	TM9SF1-201	2740	815aa	ENSP00000451949.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJC4 E9PL78 E9PNW2 E9PQY7 E9PS99 E9PSI1 G3V1B9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000528669.1	TM9SF1-005	2425	589aa	ENSP00000432997.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJC4 E9PL78 E9PMQ9 E9PNW2 E9PQY7 E9PS99	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000396854.4	TM9SF1-001	2055	489aa	ENSP00000380063.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41934	E9PJC4 E9PL78 E9PNW2 E9PQY7 E9PS99 O15321	NM_001014842.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000524835.1	TM9SF1-003	1938	519aa	ENSP00000434387.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNW2 G3V1B9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000530468.1	TM9SF1-010	1065	257aa	ENSP00000435857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJC4 E9PQY7 E9PS99	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528895.1	TM9SF1-011	961	300aa	ENSP00000431447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJC4 E9PL78 E9PNW2 E9PQY7 E9PS99	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528010.1	TM9SF1-009	904	210aa	ENSP00000433792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJC4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000525592.1	TM9SF1-007	882	242aa	ENSP00000432435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PJC4 E9PQY7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000530563.1	TM9SF1-008	721	207aa	ENSP00000437127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PNW2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532632.1	TM9SF1-012	505	133aa	ENSP00000436486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP24	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000529332.1	TM9SF1-004	2107	420aa	ENSP00000431747.1	Nonsense mediated decay		E9PJC4 E9PJM1 E9PL78 E9PNW2 E9PQY7 E9PS99	-	-
ENST00000531406.1	TM9SF1-006	1089	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

.

Summary

.

.