Gene: SCN3A ENSG00000153253

Description

sodium channel, voltage-gated, type III, alpha subunit [Source:HGNC Symbol;Acc:10590]

Gene Synonyms

KIAA1356, NAC3, Nav1.3

Location

Chromosome 2: 165,944,032-166,060,577 reverse strand.

GRCh37:CM000664.1

About this gene

This gene has 9 transcripts (splice variants), 16 paralogues and is associated with 3 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000283254.7	SCN3A-001	9091	2000aa	ENSP00000283254.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33312	C9JBM7 F5H4V8 Q9NY46	NM_006922.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000360093.3	SCN3A-201	9123	2000aa	ENSP00000353206.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBM7 F5H4V8 Q9GZM4 Q9NY46	NM_001081677.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000409101.3	SCN3A-002	6599	1951aa	ENSP00000386726.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46440	C9JBM7 F5H4V8 Q9GZM4 Q9NY46	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000440431.2	SCN3A-004	4146	1364aa	ENSP00000403348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBM7 E7EUE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000540861.1	SCN3A-202	1908	483aa	ENSP00000439920.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H4V8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000453007.1	SCN3A-003	1216	200aa	ENSP00000391569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JBM7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000465043.1	SCN3A-007	531	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484898.1	SCN3A-008	262	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000471697.1	SCN3A-006	555	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Gene: SCN3A ENSG00000153253

Summary