Description
charged multivesicular body protein 1A [Source:HGNC Symbol;Acc:8740]
Gene Synonyms
CHMP1, KIAA0047, PCH8, PCOLN3, PRSM1, VPS46-1, VPS46A, Vps46A
Location
Chromosome 16: 89,710,839-89,724,253 reverse strand.
GRCh37:CM000678.1
About this gene
This gene has 11 transcripts (splice variants), 1 paralogue and is associated with 4 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000397901.3 | CHMP1A-001 | 2483 | 196aa | ENSP00000380998.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS45552 | F5H875 Q9HD42 | NM_002768.4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000253475.5 | CHMP1A-201 | 2332 | 240aa | ENSP00000253475.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6NG32 | NM_001083314.3 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000535997.2 | CHMP1A-002 | 2295 | 132aa | ENSP00000442120.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H875 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000550102.1 | CHMP1A-011 | 803 | 187aa | ENSP00000449243.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F8VVT7 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000549328.1 | CHMP1A-009 | 1003 | 181aa | ENSP00000447899.1 | Nonsense mediated decay | F8VUA2 | - | - | |
| ENST00000547614.1 | CHMP1A-010 | 653 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000547687.1 | CHMP1A-004 | 2007 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000549139.1 | CHMP1A-008 | 812 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000551981.1 | CHMP1A-006 | 689 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000548650.1 | CHMP1A-007 | 566 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000550872.1 | CHMP1A-005 | 533 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
