Description
collagen, type XXI, alpha 1 [Source:HGNC Symbol;Acc:17025]
Gene Synonyms
COL1AL, COLA1L, dJ682J15.1, dJ708F5.1
Location
Chromosome 6: 55,921,388-56,258,892 reverse strand.
GRCh37:CM000668.1
About this gene
This gene has 13 transcripts (splice variants), 115 orthologues and 37 paralogues.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000244728.5 | COL21A1-001 | 4339 | 957aa | ENSP00000244728.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS55025 | A6PVD9 Q96P44 | NM_030820.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000535941.1 | COL21A1-202 | 4172 | 957aa | ENSP00000444384.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6PVD9 F5GZK2 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000370819.1 | COL21A1-002 | 4094 | 954aa | ENSP00000359855.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6PVD9 Q96P44 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000370808.2 | COL21A1-201 | 2038 | 323aa | ENSP00000359844.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q96P44 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000370817.3 | COL21A1-005 | 624 | 136aa | ENSP00000359853.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A6PVD9 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000456983.1 | COL21A1-003 | 480 | 125aa | ENSP00000390958.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000488912.1 | COL21A1-010 | 2327 | 79aa | ENSP00000433624.1 | Nonsense mediated decay | H0YDH6 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000467045.1 | COL21A1-006 | 2291 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000469682.1 | COL21A1-007 | 778 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000484987.1 | COL21A1-008 | 598 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000467216.2 | COL21A1-009 | 277 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000482933.1 | COL21A1-011 | 1413 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461489.1 | COL21A1-004 | 555 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
