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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: OTX1 ENSG00000115507

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Description

orthodenticle homeobox 1 [Source:HGNC Symbol;Acc:8521]

Location

Chromosome 2: 63,277,192-63,284,971 forward strand.

GRCh37:CM000664.1

About this gene

This gene has 6 transcripts (splice variants) and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282549.2	OTX1-001	2861	354aa	ENSP00000282549.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1873	B4DM62 P32242 Q9P2R2	NM_014562.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000366671.3	OTX1-002	2861	354aa	ENSP00000355631.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1873	B4DM62 P32242 Q9P2R2	NM_001199770.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405984.4	OTX1-005	1694	101aa	ENSP00000385782.4	Nonsense mediated decay		B5MC54	-	-
ENST00000484066.2	OTX1-003	1244	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477348.1	OTX1-004	624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476383.1	OTX1-006	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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