Transcript: ENST00000282549.2 OTX1-001

Description

orthodenticle homeobox 1 [Source:HGNC Symbol;Acc:8521]

Location

About this transcript

This transcript has 5 exons, is annotated with 21 domains and features, is associated with 3646 variant alleles and maps to 362 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000366671.3	OTX1-002	2861	354aa	ENSP00000355631.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1873	B4DM62 P32242 Q9P2R2	NM_001199770.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000282549.2	OTX1-001	2861	354aa	ENSP00000282549.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1873	B4DM62 P32242 Q9P2R2	NM_014562.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000405984.4	OTX1-005	1694	101aa	ENSP00000385782.4	Nonsense mediated decay		B5MC54	-	-
ENST00000484066.2	OTX1-003	1244	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477348.1	OTX1-004	624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476383.1	OTX1-006	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 2,861 bps, Translation length: 354 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P32242

CCDS

This transcript is a member of the Human CCDS set: CCDS1873

Version

ENST00000282549.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000251617 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.