Transcript: ENST00000484066.2 OTX1-003

Description

orthodenticle homeobox 1 [Source:HGNC Symbol;Acc:8521]

Location

Chromosome 2: 63,277,876-63,280,681 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1373 variant alleles and maps to 232 oligo probes.

Gene

This transcript is a product of gene ENSG00000115507.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000282549.2	OTX1-001	2861	354aa	ENSP00000282549.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1873	B4DM62 P32242 Q9P2R2	NM_014562.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000366671.3	OTX1-002	2861	354aa	ENSP00000355631.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1873	B4DM62 P32242 Q9P2R2	NM_001199770.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000405984.4	OTX1-005	1694	101aa	ENSP00000385782.4	Nonsense mediated decay		B5MC54	-	-
ENST00000484066.2	OTX1-003	1244	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000477348.1	OTX1-004	624	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476383.1	OTX1-006	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,244 bps,

Version

ENST00000484066.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000326732 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000484066.2 OTX1-003

Summary