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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TDP1 ENSG00000042088

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Description

tyrosyl-DNA phosphodiesterase 1 [Source:HGNC Symbol;Acc:18884]

Gene Synonyms

FLJ11090, SCAN1

Location

Chromosome 14: 90,421,283-90,511,106 forward strand.

GRCh37:CM000676.1

About this gene

This gene has 18 transcripts (splice variants) and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335725.4	TDP1-001	3696	608aa	ENSP00000337353.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9888	B3KN41 G3V2J6 G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9 Q9NUW8	NM_018319.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393452.3	TDP1-003	2370	589aa	ENSP00000377098.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EPD8 G3V2J6 G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357382.3	TDP1-201	2210	369aa	ENSP00000349952.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KN41 Q86TV8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393454.2	TDP1-006	2068	608aa	ENSP00000377099.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9888	B3KN41 G3V2J6 G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9 Q9NUW8	NM_001008744.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555880.1	TDP1-007	1894	578aa	ENSP00000450628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2F4 G3V2J6 G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000556063.1	TDP1-008	1076	281aa	ENSP00000450795.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000554180.1	TDP1-009	910	279aa	ENSP00000450872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553527.1	TDP1-013	910	146aa	ENSP00000451358.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3Q0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553617.1	TDP1-010	876	219aa	ENSP00000450708.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V2J6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556867.1	TDP1-011	748	151aa	ENSP00000452279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3Q0 G3V5B8 G3V5F9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553989.1	TDP1-014	728	147aa	ENSP00000452333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3Q0 G3V5F9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000556498.1	TDP1-017	597	161aa	ENSP00000452183.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3Q0 G3V554 G3V5B8 G3V5F9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554976.1	TDP1-002	3040	191aa	ENSP00000452042.1	Nonsense mediated decay		G3V3Q0 G3V4W8 G3V554 G3V5B8 G3V5F9	-	-
ENST00000545686.2	TDP1-004	2488	298aa	ENSP00000444587.2	Nonsense mediated decay		G3V2U6 G3V3Q0 G3V554 G3V5B8 G3V5F9 Q9BRS7	-	-
ENST00000555178.1	TDP1-005	2200	259aa	ENSP00000452363.1	Nonsense mediated decay		G3V3Q0 G3V554 G3V5B8 G3V5F9 G3V5H9	-	-
ENST00000557782.1	TDP1-016	318	51aa	ENSP00000451767.1	Nonsense mediated decay		H0YJL7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000555565.1	TDP1-015	524	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553569.1	TDP1-012	879	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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