Transcript: ENST00000270233.6 BCAM-001

Description

basal cell adhesion molecule (Lutheran blood group) [Source:HGNC Symbol;Acc:6722]

Gene Synonyms

AU, CD239, LU, MSK19

Location

Chromosome 19: 45,312,360-45,324,671 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 37 domains and features, is associated with 6387 variant alleles and maps to 567 oligo probes.

Gene

This transcript is a product of gene ENSG00000187244.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000589651.1	BCAM-002	2686	588aa	ENSP00000476710.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42575	A9YWT4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000270233.6	BCAM-001	2402	628aa	ENSP00000270233.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12644	A9YWT4 P50895	NM_005581.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000591520.1	BCAM-006	878	291aa	ENSP00000467100.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENU8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000590196.1	BCAM-005	518	61aa	ENSP00000468189.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000590624.1	BCAM-011	991	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588303.1	BCAM-004	914	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588603.1	BCAM-007	904	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588714.1	BCAM-010	723	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589558.1	BCAM-009	611	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590108.1	BCAM-008	429	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,402 bps, Translation length: 628 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P50895

CCDS

This transcript is a member of the Human CCDS set: CCDS12644

Version

ENST00000270233.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000453220 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000270233.6 BCAM-001

Summary