Transcript: ENST00000324357.9 TCP11L1-201

Description

t-complex 11, testis-specific-like 1 [Source:HGNC Symbol;Acc:25655]

Gene Synonyms

FLJ11336, dJ85M6.3

Location

Chromosome 11: 33,080,518-33,127,488 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 4 domains and features, is associated with 18843 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSG00000176148.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334274.4	TCP11L1-001	2817	509aa	ENSP00000335595.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7882	E9PP52 E9PS88 Q9NUJ3 R4GNF5	NM_018393.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432887.1	TCP11L1-202	2633	509aa	ENSP00000395070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7882	E9PP52 E9PS88 Q9NUJ3 R4GNF5	NM_001145541.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531632.2	TCP11L1-010	1898	509aa	ENSP00000433067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7882	E9PP52 E9PS88 Q9NUJ3 R4GNF5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000324357.9	TCP11L1-201	1572	374aa	ENSP00000316279.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EN41	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000530419.1	TCP11L1-007	905	144aa	ENSP00000436428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PP52 E9PS88 R4GNF5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602733.1	TCP11L1-003	747	106aa	ENSP00000473628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PS88 R4GNF5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528962.1	TCP11L1-005	711	158aa	ENSP00000436471.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000528898.1	TCP11L1-008	547	54aa	ENSP00000435870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PS88	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528107.1	TCP11L1-002	3390	154aa	ENSP00000431200.1	Nonsense mediated decay		E9PMB0 E9PS88	-	-
ENST00000527661.1	TCP11L1-004	2468	595aa	ENSP00000435667.1	Nonsense mediated decay		E7EN41 E9PJ55 E9PP52 E9PS88 R4GNF5	-	-
ENST00000530171.1	TCP11L1-009	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532687.1	TCP11L1-006	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,572 bps, Translation length: 374 residues

Version

ENST00000324357.9

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Stop codons

This transcript has a variant, rs3758741, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HAPMAP-TSI, ESP6500:African_American, CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HapMap-CEU, ESP6500:European_American, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-MKK.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000324357.9 TCP11L1-201

Summary