Transcript: ENST00000540918.2 TTC39C-006

Description

tetratricopeptide repeat domain 39C [Source:HGNC Symbol;Acc:26595]

Gene Synonyms

C18orf17, FLJ33761, HsT2697

Location

Chromosome 18: 21,693,317-21,715,574 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 6 domains and features, is associated with 9550 variant alleles and maps to 406 oligo probes.

Gene

This transcript is a product of gene ENSG00000168234.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000540918.2	TTC39C-006	4117	276aa	ENSP00000443016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V1P2 J3QKX7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000317571.3	TTC39C-001	2442	583aa	ENSP00000323645.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45839	J3QKX7 Q8N584	NM_001135993.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000304621.6	TTC39C-002	2304	522aa	ENSP00000306598.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32804	J3QKX7 Q8N584	NM_153211.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584250.1	TTC39C-004	1048	76aa	ENSP00000464344.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58616	Q8N584	NM_001243425.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577185.1	TTC39C-011	533	43aa	ENSP00000463610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QLL8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579214.1	TTC39C-007	389	67aa	ENSP00000463283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKX7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000578150.1	TTC39C-003	499	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000584424.1	TTC39C-005	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584095.1	TTC39C-010	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000581394.1	TTC39C-009	510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 4,117 bps, Translation length: 276 residues

Version

ENST00000540918.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000446110 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000540918.2 TTC39C-006

Summary