Transcript: ENST00000558843.1 COPS2-006

Description

COP9 signalosome subunit 2 [Source:HGNC Symbol;Acc:30747]

Gene Synonyms

ALIEN, CSN2, SGN2, TRIP15

Location

Chromosome 15: 49,426,230-49,447,787 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 4 domains and features, is associated with 9143 variant alleles and maps to 252 oligo probes.

Gene

This transcript is a product of gene ENSG00000166200.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000388901.5	COPS2-001	4061	443aa	ENSP00000373553.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32235	H0YKU5 P61201	NM_004236.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299259.6	COPS2-003	2036	450aa	ENSP00000299259.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45257	P61201 Q59EL2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542928.1	COPS2-002	1580	379aa	ENSP00000443664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DIH5 H0YM03	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558843.1	COPS2-006	803	263aa	ENSP00000452944.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKU5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000561248.1	COPS2-005	575	183aa	ENSP00000453412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000560240.1	COPS2-008	511	55aa	ENSP00000453546.1	Nonsense mediated decay		H0YMC2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558545.1	COPS2-004	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559016.1	COPS2-007	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 803 bps, Translation length: 263 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000558843.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000417843 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000558843.1 COPS2-006

Summary