Transcript: ENST00000542928.1 COPS2-002

Description

COP9 signalosome subunit 2 [Source:HGNC Symbol;Acc:30747]

Gene Synonyms

ALIEN, CSN2, SGN2, TRIP15

Location

Chromosome 15: 49,419,733-49,447,801 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 10 domains and features, is associated with 11989 variant alleles and maps to 450 oligo probes.

Gene

This transcript is a product of gene ENSG00000166200.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000388901.5	COPS2-001	4061	443aa	ENSP00000373553.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32235	H0YKU5 P61201	NM_004236.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000299259.6	COPS2-003	2036	450aa	ENSP00000299259.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45257	P61201 Q59EL2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542928.1	COPS2-002	1580	379aa	ENSP00000443664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DIH5 H0YM03	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558843.1	COPS2-006	803	263aa	ENSP00000452944.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKU5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000561248.1	COPS2-005	575	183aa	ENSP00000453412.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YM03	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000560240.1	COPS2-008	511	55aa	ENSP00000453546.1	Nonsense mediated decay		H0YMC2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000558545.1	COPS2-004	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000559016.1	COPS2-007	570	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,580 bps, Translation length: 379 residues

Version

ENST00000542928.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000417842 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000542928.1 COPS2-002

Summary