Transcript: ENST00000287859.6 C1orf27-001

Description

chromosome 1 open reading frame 27 [Source:HGNC Symbol;Acc:24299]

Gene Synonyms

FLJ20505, ODR4, TTG1, odr-4

Location

Chromosome 1: 186,345,001-186,390,510 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 4 domains and features, is associated with 20483 variant alleles and maps to 543 oligo probes.

Gene

This transcript is a product of gene ENSG00000157181.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000287859.6	C1orf27-001	3792	454aa	ENSP00000287859.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53448	Q5SWX8	NM_017847.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367470.3	C1orf27-201	3823	431aa	ENSP00000356440.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53449	Q5SWX8	NM_001164245.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419367.3	C1orf27-004	1915	422aa	ENSP00000395084.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53450	Q5SWX8	NM_001164246.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432021.3	C1orf27-005	1296	431aa	ENSP00000402029.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53449	Q5SWX8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000461662.1	C1orf27-002	503	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000478571.1	C1orf27-003	382	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 13, Transcript length: 3,792 bps, Translation length: 454 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5SWX8

CCDS

This transcript is a member of the Human CCDS set: CCDS53448

Version

ENST00000287859.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000086352 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000287859.6 C1orf27-001

Summary