Transcript: ENST00000378880.2 PAMR1-001

Description

peptidase domain containing associated with muscle regeneration 1 [Source:HGNC Symbol;Acc:24554]

Gene Synonyms

DKFZP586H2123, RAMP

Location

Chromosome 11: 35,453,370-35,547,579 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 37 domains and features, is associated with 39165 variant alleles and maps to 418 oligo probes.

Gene

This transcript is a product of gene ENSG00000149090.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000378880.2	PAMR1-001	3143	720aa	ENSP00000368158.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31460	E9PIV1 Q6UXH9	NM_001001991.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532848.1	PAMR1-003	2843	680aa	ENSP00000433868.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS60759	E9PIV1	NM_001282675.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000278360.3	PAMR1-002	2786	737aa	ENSP00000278360.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7898	E9PQ70 Q6UXH9	NM_015430.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527605.1	PAMR1-005	2402	675aa	ENSP00000432591.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQ70	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000378878.3	PAMR1-201	2374	609aa	ENSP00000368156.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS60760	A8MQ58 E9PMN5	NM_001282676.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529303.1	PAMR1-007	551	177aa	ENSP00000433024.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PMN5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000534803.1	PAMR1-004	952	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531219.1	PAMR1-006	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,143 bps, Translation length: 720 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6UXH9

CCDS

This transcript is a member of the Human CCDS set: CCDS31460

Version

ENST00000378880.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000389177 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000378880.2 PAMR1-001

Summary