Transcript: ENST00000520830.1 ATP6V1B2-004

Description

ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 [Source:HGNC Symbol;Acc:854]

Gene Synonyms

ATP6B1B2, ATP6B2, HO57, VATB, VPP3, Vma2

Location

About this transcript

This transcript has 7 exons, is annotated with 2 domains and features, is associated with 6863 variant alleles and maps to 223 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000276390.2	ATP6V1B2-001	2875	511aa	ENSP00000276390.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6014	B4DFM5 B4DQI9 P21281	NM_001693.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000519667.1	ATP6V1B2-005	670	199aa	ENSP00000430682.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000521442.1	ATP6V1B2-007	738	49aa	ENSP00000430866.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000520830.1	ATP6V1B2-004	649	56aa	ENSP00000428069.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000523478.1	ATP6V1B2-006	572	66aa	ENSP00000430154.1	Nonsense mediated decay		E5RGH6	-	-
ENST00000523482.1	ATP6V1B2-003	6907	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 2, Transcript length: 649 bps, Translation length: 56 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000520830.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000375126 (version 1)