Transcript: ENST00000519402.1 ITK-002

Description

IL2-inducible T-cell kinase [Source:HGNC Symbol;Acc:6171]

Gene Synonyms

EMT, LPFS1, LYK, PSCTK2

Location

Chromosome 5: 156,607,854-156,682,109 forward strand.

About this transcript

This transcript has 16 exons, is associated with 32638 variant alleles and maps to 657 oligo probes.

Gene

This transcript is a product of gene ENSG00000113263.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000422843.3	ITK-001	4528	620aa	ENSP00000398655.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4336	E5RFR5 Q08881 Q7Z318	NM_005546.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521769.1	ITK-008	571	73aa	ENSP00000430327.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFR5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517779.1	ITK-007	587	116aa	ENSP00000431054.1	Nonsense mediated decay		E5RJY4	-	-
ENST00000519749.1	ITK-005	3375	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522616.1	ITK-003	1102	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519402.1	ITK-002	5869	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000523926.1	ITK-011	996	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520173.1	ITK-010	831	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000520555.1	ITK-006	606	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519759.1	ITK-009	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 0, Transcript length: 5,869 bps,

Version

ENST00000519402.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373685 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000519402.1 ITK-002

Summary