Transcript: ENST00000552790.1 CRY1-002

Description

cryptochrome 1 (photolyase-like) [Source:HGNC Symbol;Acc:2384]

Gene Synonyms

PHLL1

Location

About this transcript

This transcript has 13 exons, is associated with 24883 variant alleles and maps to 443 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000008527.5	CRY1-001	3267	586aa	ENSP00000008527.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9112	A2I2P0 H0YHT0 Q16526	NM_004075.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549356.1	CRY1-004	621	106aa	ENSP00000447738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YHT0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000550633.1	CRY1-003	830	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000552790.1	CRY1-002	3834	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546722.1	CRY1-005	471	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 0, Transcript length: 3,834 bps,

Version

ENST00000552790.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406828 (version 1)