Transcript: ENST00000325558.6 PGA3-001

Description

pepsinogen 3, group I (pepsinogen A) [Source:HGNC Symbol;Acc:8885]

Gene Synonyms

PGA4, PGA5

Location

Chromosome 11: 60,970,852-60,980,570 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features, is associated with 2965 variant alleles and maps to 924 oligo probes.

Gene

This transcript is a product of gene ENSG00000229859.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000325558.6	PGA3-001	1748	388aa	ENSP00000322192.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31574	F5H0H6 F5H7H3 F5H842 P0DJD8	NM_001079807.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543505.1	PGA3-010	1627	265aa	ENSP00000443732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7H3 F5H842	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543125.1	PGA3-008	968	234aa	ENSP00000440177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXL4 F5H0H6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538258.1	PGA3-007	867	128aa	ENSP00000439846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0H6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543349.1	PGA3-009	608	184aa	ENSP00000442525.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7H3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535551.1	PGA3-011	1449	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541699.1	PGA3-006	925	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000537954.1	PGA3-004	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000539649.1	PGA3-005	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,748 bps, Translation length: 388 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P0DJD8

CCDS

This transcript is a member of the Human CCDS set: CCDS31574

Version

ENST00000325558.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000397955 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000325558.6 PGA3-001

Summary