Transcript: ENST00000518446.1 SFTA3-005

Description

surfactant associated 3 [Source:HGNC Symbol;Acc:18387]

Gene Synonyms

SFTPH

Location

About this transcript

This transcript has 6 exons, is associated with 16520 variant alleles and maps to 213 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000518529.2	SFTA3-001	1531	94aa	ENSP00000428331.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45097	P0C7M3	NM_001101341.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521114.1	SFTA3-002	1191	76aa	ENSP00000427853.1	Nonsense mediated decay		E5RG42	-	-
ENST00000518446.1	SFTA3-005	791	76aa	ENSP00000429830.1	Nonsense mediated decay		E5RG42	-	-
ENST00000518002.1	SFTA3-009	770	95aa	ENSP00000428247.1	Nonsense mediated decay		G5EA12	-	-
ENST00000524122.1	SFTA3-008	694	76aa	ENSP00000428198.1	Nonsense mediated decay		E5RG42	-	-
ENST00000518987.1	SFTA3-006	682	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521380.1	SFTA3-010	316	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519052.1	SFTA3-004	1796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000418548.3	SFTA3-007	870	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 791 bps, Translation length: 76 residues

Version

ENST00000518446.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000376222 (version 1)