Transcript: ENST00000582540.1 C17orf72-004

Description

chromosome 17 open reading frame 72 [Source:HGNC Symbol;Acc:25673]

Gene Synonyms

DKFZp761M2312, FLJ11724

Location

Chromosome 17: 62,075,711-62,079,580 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 2364 variant alleles and maps to 157 oligo probes.

Gene

This transcript is a product of gene ENSG00000224383.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000425164.3	C17orf72-002	1266	236aa	ENSP00000396936.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54157	P0C7W0	NM_001191029.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000412177.1	C17orf72-001	3127	189aa	ENSP00000400986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54158	B4DG13 J3QR92 P0C7W0	NM_001191030.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579184.1	C17orf72-003	1052	182aa	ENSP00000462097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58586	B4DG13 J3QR92 P0C7W0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582540.1	C17orf72-004	967	138aa	ENSP00000464103.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QR92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539996.1	C17orf72-201	967	139aa	ENSP00000437876.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DG13 J3QR92	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577953.1	C17orf72-008	565	98aa	ENSP00000463279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54159	P0C7W0	NM_001191031.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000583891.1	C17orf72-010	478	156aa	ENSP00000462130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRR4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000580752.1	C17orf72-009	458	37aa	ENSP00000461973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KRF4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000225760.5	C17orf72-006	3059	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000582530.1	C17orf72-005	2117	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000579222.1	C17orf72-007	1637	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 967 bps, Translation length: 138 residues

Version

ENST00000582540.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000442610 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000582540.1 C17orf72-004

Summary