Transcript: ENST00000570396.1 LCAT-012

Description

lecithin-cholesterol acyltransferase [Source:HGNC Symbol;Acc:6522]

Location

Chromosome 16: 67,975,720-67,976,361 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 2 domains and features, is associated with 302 variant alleles and maps to 67 oligo probes.

Gene

This transcript is a product of gene ENSG00000213398.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264005.5	LCAT-001	1507	440aa	ENSP00000264005.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10854	J3QSE5 P04180	NM_000229.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570980.1	LCAT-004	1240	255aa	ENSP00000464651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QSE5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576450.1	LCAT-011	359	80aa	ENSP00000458141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570369.1	LCAT-008	348	107aa	ENSP00000459014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570396.1	LCAT-012	322	61aa	ENSP00000459291.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L215	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000573538.1	LCAT-007	1083	138aa	ENSP00000463220.1	Nonsense mediated decay		J3QKT0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000575467.1	LCAT-003	842	93aa	ENSP00000460653.1	Nonsense mediated decay		I3L3R0	-	-
ENST00000575277.1	LCAT-005	573	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000573846.1	LCAT-006	568	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 322 bps, Translation length: 61 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000570396.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000437678 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000570396.1 LCAT-012

Summary