Transcript: ENST00000375661.5 LSM2-001

Description

LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:13940]

Gene Synonyms

C6orf28, G7B, G7b, YBL026W, snRNP

Location

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 4093 variant alleles and maps to 903 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375661.5	LSM2-001	876	95aa	ENSP00000364813.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4722	Q9Y333	NM_021177.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491421.1	LSM2-006	820	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493387.1	LSM2-005	767	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000477182.1	LSM2-002	767	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470086.1	LSM2-003	713	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470083.1	LSM2-004	641	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475835.2	LSM2-007	211	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 876 bps, Translation length: 95 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y333

CCDS

This transcript is a member of the Human CCDS set: CCDS4722

Version

ENST00000375661.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000076205 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.