Transcript: ENST00000483281.1 RXRB-004

Description

retinoid X receptor, beta [Source:HGNC Symbol;Acc:10478]

Gene Synonyms

DAUDI6, H-2RIIBP, NR2B2, RCoR-1

Location

Chromosome 6: 33,161,997-33,168,414 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 3 domains and features, is associated with 2962 variant alleles and maps to 1633 oligo probes.

Gene

This transcript is a product of gene ENSG00000204231.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000374680.3	RXRB-001	2908	533aa	ENSP00000363812.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4768	E9PK75 P28702 Q5STP9	NM_021976.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000374685.4	RXRB-002	2846	537aa	ENSP00000363817.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59007	E9PK75 P28702	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000413614.2	RXRB-201	1324	286aa	ENSP00000415561.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z3E4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544186.1	RXRB-202	1227	347aa	ENSP00000439222.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PK95	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483281.1	RXRB-004	1977	79aa	ENSP00000431369.1	Nonsense mediated decay		E9PK75	-	-
ENST00000481441.1	RXRB-003	1330	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483821.1	RXRB-006	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 2, Transcript length: 1,977 bps, Translation length: 79 residues

Version

ENST00000483281.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000276189 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000483281.1 RXRB-004

Summary