Transcript: ENST00000361927.4 COLGALT2-001

Description

collagen beta(1-O)galactosyltransferase 2 [Source:HGNC Symbol;Acc:16790]

Gene Synonyms

C1orf17, GLT25D2, KIAA0584

Location

About this transcript

This transcript has 12 exons, is annotated with 10 domains and features, is associated with 41048 variant alleles and maps to 550 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361927.4	COLGALT2-001	5177	626aa	ENSP00000354960.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1360	B3KT92 Q5SXQ5 Q8IYK4	NM_015101.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367521.1	COLGALT2-003	4723	234aa	ENSP00000356491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SXQ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546159.1	COLGALT2-201	2352	554aa	ENSP00000439112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H3T5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367520.3	COLGALT2-002	2325	363aa	ENSP00000356490.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SXQ3 Q5SXQ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486375.1	COLGALT2-004	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 5,177 bps, Translation length: 626 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8IYK4

CCDS

This transcript is a member of the Human CCDS set: CCDS1360

Version

ENST00000361927.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000086128 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.