Transcript: ENST00000535977.1 RAB40C-201

Description

RAB40C, member RAS oncogene family [Source:HGNC Symbol;Acc:18285]

Gene Synonyms

RARL, RASL8C

Location

Chromosome 16: 639,357-679,271 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 21 domains and features, is associated with 21711 variant alleles and maps to 419 oligo probes.

Gene

This transcript is a product of gene ENSG00000197562.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000535977.1	RAB40C-201	2717	281aa	ENSP00000438492.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10413	H3BME4 H3BMH4 H3BNV8 H3BTC6 Q5PXE8 Q96S21	NM_001172663.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000248139.3	RAB40C-001	2699	281aa	ENSP00000248139.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10413	H3BME4 H3BMH4 H3BNV8 H3BTC6 Q5PXE8 Q96S21	NM_021168.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539661.1	RAB40C-203	2609	281aa	ENSP00000445050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10413	H3BME4 H3BMH4 H3BNV8 H3BTC6 Q5PXE8 Q96S21	NM_001172664.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538492.1	RAB40C-202	2569	281aa	ENSP00000438382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10413	H3BME4 H3BMH4 H3BNV8 H3BTC6 Q5PXE8 Q96S21	NM_001172666.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564703.1	RAB40C-005	921	38aa	ENSP00000454383.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMH4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000566290.1	RAB40C-008	753	213aa	ENSP00000455029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BME4 H3BMH4 H3BNV8 H3BTC6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563109.1	RAB40C-003	710	237aa	ENSP00000455225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMH4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000569575.1	RAB40C-007	692	156aa	ENSP00000454347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BME4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568586.1	RAB40C-009	648	188aa	ENSP00000457116.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BME4 H3BMH4 H3BTC6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565511.1	RAB40C-004	783	130aa	ENSP00000457845.1	Nonsense mediated decay		H3BUX0	-	-
ENST00000509637.2	RAB40C-006	565	49aa	ENSP00000455232.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561781.1	RAB40C-002	2439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,717 bps, Translation length: 281 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96S21

CCDS

This transcript is a member of the Human CCDS set: CCDS10413

Version

ENST00000535977.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000535977.1 RAB40C-201

Summary