Transcript: ENST00000519382.1 TRAPPC2-004

Description

trafficking protein particle complex 2 [Source:HGNC Symbol;Acc:23068]

Gene Synonyms

MIP-2A, MIP2A, SEDL, SEDT, TRAPPC2P1, TRS20, ZNF547, ZNF547L, hYP38334

Location

Chromosome X: 13,733,656-13,752,664 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 5966 variant alleles and maps to 326 oligo probes.

Gene

This transcript is a product of gene ENSG00000196459.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000453655.2	TRAPPC2-203	2879	147aa	ENSP00000394629.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFG0 G1K394	NM_001128835.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380579.1	TRAPPC2-002	2776	140aa	ENSP00000369953.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48082	E5RFG0 P0DI81 Q6IBE5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359680.5	TRAPPC2-202	2716	140aa	ENSP00000352708.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48082	E5RFG0 P0DI81 Q6IBE5	NM_014563.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000358231.5	TRAPPC2-201	1980	140aa	ENSP00000350966.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48082	E5RFG0 P0DI81 Q6IBE5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458511.2	TRAPPC2-005	678	174aa	ENSP00000392495.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48083	E5RFG0 P0DI81 Q6IBE5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000518847.1	TRAPPC2-008	562	74aa	ENSP00000428900.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFG0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000519885.1	TRAPPC2-006	561	113aa	ENSP00000430725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFG0 F5H785	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380578.1	TRAPPC2-001	3108	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519382.1	TRAPPC2-004	1411	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000517553.1	TRAPPC2-007	475	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,411 bps,

Version

ENST00000519382.1

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000377269 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000519382.1 TRAPPC2-004

Summary