Transcript: ENST00000375643.3 IARS-001

Description

isoleucyl-tRNA synthetase [Source:HGNC Symbol;Acc:5330]

Gene Synonyms

IARS1, ILERS, ILRS, IRS, PRO0785

Location

Chromosome 9: 94,972,489-95,055,982 reverse strand.

About this transcript

This transcript has 34 exons, is annotated with 20 domains and features, is associated with 37287 variant alleles and maps to 1099 oligo probes.

Gene

This transcript is a product of gene ENSG00000196305.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000375643.3	IARS-001	4656	1262aa	ENSP00000364794.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6694	J3KR24 P41252 Q59G75 Q5TCC4 Q5TCD1 Q7L4K8 Q9P1N9	NM_013417.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000443024.2	IARS-202	4406	1262aa	ENSP00000406448.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6694	J3KR24 P41252 Q59G75 Q5TCC4 Q5TCD1 Q7L4K8 Q9P1N9	NM_002161.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375629.3	IARS-201	4382	174aa	ENSP00000364780.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TCC6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447699.2	IARS-203	4186	1152aa	ENSP00000415020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KR24 Q5TCC4 Q7L4K8 Q9P1N9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395554.3	IARS-002	1103	330aa	ENSP00000378922.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TCD1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000375627.1	IARS-010	697	174aa	ENSP00000364778.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TCC6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430417.1	IARS-006	414	72aa	ENSP00000387603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TCC9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000474340.1	IARS-012	1748	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490438.1	IARS-007	887	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498025.1	IARS-008	707	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472894.1	IARS-009	651	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473915.1	IARS-011	610	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467876.1	IARS-013	298	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 34, Coding exons: 33, Transcript length: 4,656 bps, Translation length: 1,262 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P41252

CCDS

This transcript is a member of the Human CCDS set: CCDS6694

Version

ENST00000375643.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Stop codons

This transcript has a variant, rs2230404, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-YRI.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000053059 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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All species

Recent locations

Transcript: ENST00000375643.3 IARS-001

Summary