Transcript: ENST00000435358.1 MMP23B-004

Description

matrix metallopeptidase 23B [Source:HGNC Symbol;Acc:7171]

Gene Synonyms

MIFR, MIFR-1, MMP22, MMP23A

Location

Chromosome 1: 1,568,582-1,569,944 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 535 variant alleles and maps to 459 oligo probes.

Gene

This transcript is a product of gene ENSG00000189409.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000356026.5	MMP23B-001	1326	390aa	ENSP00000348308.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30559	J3KRS4 O75900	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378675.3	MMP23B-002	1309	386aa	ENSP00000367945.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75086	NM_006983.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479814.1	MMP23B-003	903	265aa	ENSP00000426293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YA69	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000503792.1	MMP23B-010	799	258aa	ENSP00000426857.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAE5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000435358.1	MMP23B-004	750	242aa	ENSP00000405867.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000472264.1	MMP23B-005	556	166aa	ENSP00000424976.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6REP6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512731.1	MMP23B-009	1531	238aa	ENSP00000423780.1	Nonsense mediated decay		B4DMZ6	-	-
ENST00000490017.1	MMP23B-008	530	87aa	ENSP00000462142.1	Nonsense mediated decay		J3KRS4	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000489782.1	MMP23B-006	626	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000486400.1	MMP23B-007	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 750 bps, Translation length: 242 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000435358.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000158487 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000435358.1 MMP23B-004

Summary