Transcript: ENST00000571854.1 SMYD4-003

Description

SET and MYND domain containing 4 [Source:HGNC Symbol;Acc:21067]

Gene Synonyms

KIAA1936, ZMYND21

Location

Chromosome 17: 1,704,156-1,733,928 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 5 domains and features, is associated with 14766 variant alleles and maps to 126 oligo probes.

Gene

This transcript is a product of gene ENSG00000186532.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000305513.7	SMYD4-001	4384	804aa	ENSP00000304360.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11013	I3L2P4 I3L428 I3L496 Q8IYR2	NM_052928.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491788.1	SMYD4-002	3016	558aa	ENSP00000460921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L428	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000570368.1	SMYD4-005	793	223aa	ENSP00000459819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2P4 I3L496	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000571854.1	SMYD4-003	586	177aa	ENSP00000461089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L496	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000576633.1	SMYD4-006	515	72aa	ENSP00000459129.1	Nonsense mediated decay		I3L1V4	-	-
ENST00000573937.1	SMYD4-007	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000476292.1	SMYD4-004	553	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 586 bps, Translation length: 177 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000571854.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000318358 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000571854.1 SMYD4-003

Summary