Transcript: ENST00000333274.6 EFNA5-001

Description

ephrin-A5 [Source:HGNC Symbol;Acc:3225]

Gene Synonyms

AF1, EFL5, EPLG7, GLC1M, LERK7, RAGS

Location

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 129939 variant alleles and maps to 557 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000333274.6	EFNA5-001	5335	228aa	ENSP00000328777.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4097	P52803	NM_001962.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509503.1	EFNA5-003	637	201aa	ENSP00000426989.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDV5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510359.1	EFNA5-004	606	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505499.1	EFNA5-005	349	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504941.1	EFNA5-002	931	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 5,335 bps, Translation length: 228 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P52803

CCDS

This transcript is a member of the Human CCDS set: CCDS4097

Version

ENST00000333274.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250652 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.