Transcript: ENST00000564243.1 EIF3C-007

Description

eukaryotic translation initiation factor 3, subunit C [Source:HGNC Symbol;Acc:3279]

Gene Synonyms

EIF3CL, EIF3S8, eIF3-p110, eIF3c

Location

Chromosome 16: 28,722,795-28,746,917 forward strand.

About this transcript

This transcript has 21 exons, is annotated with 16 domains and features, is associated with 4561 variant alleles and maps to 1281 oligo probes.

Gene

This transcript is a product of gene ENSG00000184110.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331666.6	EIF3C-001	3145	913aa	ENSP00000332604.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10638	B3KNZ4 B4DVQ5 H3BPE3 H3BPE4 H3BTY8 Q99613	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566501.1	EIF3C-015	3128	913aa	ENSP00000457963.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10638	B3KNZ4 B4DVQ5 H3BPE3 H3BPE4 H3BTY8 Q99613	NM_001199142.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395587.1	EIF3C-201	3093	913aa	ENSP00000378953.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10638	B3KNZ4 B4DVQ5 H3BPE3 H3BPE4 H3BTY8 Q99613	NM_003752.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566866.1	EIF3C-010	2986	913aa	ENSP00000457418.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10638	B3KNZ4 B4DVQ5 H3BPE3 H3BPE4 H3BTY8 Q99613	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000564243.1	EIF3C-007	2870	903aa	ENSP00000456416.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66993	B3KNZ4 H3BRV0	NM_001286478.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569690.1	EIF3C-012	581	148aa	ENSP00000455278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPE4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568426.1	EIF3C-017	572	132aa	ENSP00000455277.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPE3 H3BTY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000563139.1	EIF3C-018	516	79aa	ENSP00000457389.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565099.1	EIF3C-016	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565932.1	EIF3C-011	3957	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566519.1	EIF3C-019	620	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569005.1	EIF3C-014	610	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564839.1	EIF3C-013	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566086.1	EIF3C-020	424	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 20, Transcript length: 2,870 bps, Translation length: 903 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS66993

Version

ENST00000564243.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000430997 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000564243.1 EIF3C-007

Summary