Transcript: ENST00000402868.3 SETD8-001

Description

SET domain containing (lysine methyltransferase) 8 [Source:HGNC Symbol;Acc:29489]

Gene Synonyms

KMT5A, PR-Set7, PRSET7, SET07, SET8

Location

Chromosome 12: 123,868,320-123,893,905 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 10 domains and features, is associated with 12409 variant alleles and maps to 746 oligo probes.

Gene

This transcript is a product of gene ENSG00000183955.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000402868.3	SETD8-001	3140	352aa	ENSP00000384629.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9247	Q9NQR1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000330479.4	SETD8-201	3069	352aa	ENSP00000332995.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9247	Q9NQR1	NM_020382.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437502.1	SETD8-005	901	299aa	ENSP00000413811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JKQ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000437519.1	SETD8-002	1774	91aa	ENSP00000406830.1	Nonsense mediated decay		F8WC45	-	-
ENST00000478781.2	SETD8-007	725	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485469.1	SETD8-006	454	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000537270.1	SETD8-009	352	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461103.1	SETD8-003	1000	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462311.1	SETD8-004	747	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 3,140 bps, Translation length: 352 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NQR1

CCDS

This transcript is a member of the Human CCDS set: CCDS9247

Version

ENST00000402868.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000318263 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000402868.3 SETD8-001

Summary