Transcript: ENST00000505490.2 ALYREF-001

Description

Aly/REF export factor [Source:HGNC Symbol;Acc:19071]

Gene Synonyms

ALY, ALY/REF, BEF, REF, THOC4

Location

About this transcript

This transcript has 6 exons, is annotated with 12 domains and features, is associated with 2525 variant alleles and maps to 389 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000331204.4	ALYREF-201	1095	257aa	ENSP00000331817.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86V81	NM_005782.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505490.2	ALYREF-001	1088	264aa	ENSP00000421592.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32768	E9PB61	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512673.1	ALYREF-003	441	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504015.2	ALYREF-004	254	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000511412.1	ALYREF-002	533	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,088 bps, Translation length: 264 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS32768

Version

ENST00000505490.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000360729 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.